Schedule

Day 1 - Monday, 14.12

Morning session (10am - 12.30am)

• Lecture : General introduction to the concepts of ChIP-seq / ATAC-seq
• Lecture : Introduction to the processing of sequencing data
• Lecture : Specific processing of ChIP-seq data

Afternoon session (1.30pm - 5.30pm)

• Hands-on : Quality control for ChIP-seq

• Hands-on : Peak calling using MACS2

• Hands-on : Peak annotations

• Online discussion / debriefing

Day 2 - Tuesday, 15.12

Morning session (9am - 12.30am)

• Lecture : recap of the results
• Lecture : Specific processing of ATAC-seq (footprinting)

Afternoon session (1.30pm - 5.30pm)

• Hands-on QC for ATAC-seq

• Hands-on : ATAC-seq peak calling

• Hands-on : peak annotation

• Hands-on : TF footprinting

• Wrap up and conclusion: what's next?